Selective Journal Publications

• Jiaoyan Chen, Olga Mashkova, Fernando Zhapa-Camacho, Robert Hoehndorf, Yuan He, Ian Horrocks. "Ontology Embedding: A Survey of Methods, Applications and Resources". Under work. Pre-print
• Zhuo Chen, Yichi Zhang, Yin Fang, Yuxia Geng, Lingbing Guo, Xiang Chen, Qian Li, Wen Zhang, Jiaoyan Chen, Yushan Zhu, Jiaqi Li, Xiaoze Liu, Jeff Z Pan, Ningyu Zhang, Huajun Chen. "Knowledge Graphs Meet Multi-Modal Learning: A Comprehensive Survey". Under work. Pre-print
• Wen Zhang, Yajing Xu, Peng Ye, Zhiwei Huang, Zezhong Xu, Jiaoyan Chen, Jeff Z Pan, Huajun Chen "Start From Zero: Triple Set Prediction for Automatic Knowledge Graph Completion". IEEE Transactions on Knowledge and Data Engineering, 2024. Paper
• Yuan He, Jiaoyan Chen, Hang Dong, Ian Horrocks, Carlo Allocca, Taehun Kim, Brahmananda Sapkota. "DeepOnto: A Python Package for Ontology Engineering with Deep Learning". Semantic Web Journal, 2024. Pre-print, System
• Lingbing Guo, Zhuo Chen, Jiaoyan Chen, Yichi Zhang, Zequn Sun, Zhongpu Bo, Yin Fang, Xiaoze Liu, Huajun Chen, Wen Zhang. "Distributed representations of entities in open-world knowledge graphs". Knowledge-Based Systems. Volume 290, Page 111582, 2024. Paper
• Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa Lopez, Pierre Monnin, Catia Pesquita, Petr Škoda, Valentina Tamma. "Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities". Transactions on Graph Data and Knowledge. Volume 1, Issue 1, 2023. Paper
• Jeff Z Pan, Simon Razniewski, Jan-Christoph Kalo, Sneha Singhania, Jiaoyan Chen, Stefan Dietze, etc. "Large Language Models and Knowledge Graphs: Opportunities and Challenges". Transactions on Graph Data and Knowledge. Volume 1, Issue 1, 2023. Paper
• Norman Paton, Jiaoyan Chen, Zhenyu Wu. "Dataset Discovery and Exploration: A Survey". ACM Computing Surveys. 2023. Paper
• Jiaoyan Chen, Yuxia Geng, Zhuo Chen, Jeff Z. Pan, Yuan He, Wen Zhang, Ian Horrocks and Huajun Chen. "Zero-shot and Few-shot Learning with Knowledge Graphs: A Comprehensive Survey". Proceedings of the IEEE (2023). Paper
• Jiaoyan Chen, Yuan He, Yuxia Geng, Ernesto Jimenez-Ruiz, Hang Dong, Ian Horrocks. "Contextual Semantic Embeddings for Ontology Subsumption Prediction". World Wide Web Journal (2023). Paper, Github
• Li, Yangning, Jiaoyan Chen, Yinghui Li, Tianyu Yu, Xi Chen, and Hai-Tao Zheng. "Embracing ambiguity: Improving similarity-oriented tasks with contextual synonym knowledge." Neurocomputing 555 (2023): 126583. Paper
• Nan Hu, Yike Wu, Guilin Qi, Dehai Min, Jiaoyan Chen, Jeff Z Pan, Zafar Ali. "An Empirical Study of Pre-trained Language Models in Simple Knowledge Graph Question Answering". World Wide Web Journal (2023). Paper
• Yuxia Geng, Jiaoyan Chen, Xiang Zhuang, Zhuo Chen, Jeff Z. Pan, Juan Li, Zonggan Yuan and Huajun Chen. "Benchmarking Knowledge-driven Zero-shot Learning". Journal of Web Semantics 75 (2023): 100757. Github, Paper
• Jiaoyan Chen, Ernesto Jimenez-Ruiz, Ian Horrocks, Xi Chen and Erik B. Myklebust. "An assertion and alignment correction framework for large scale knowledge bases", Semantic Web, vol. 14, no. 1, pp. 29-53, 2023. Paper
• Hang Dong, Matúš Falis, William Whiteley, Beatrice Alex, Joshua Matterson, Shaoxiong Ji, Jiaoyan Chen, Honghan Wu. "Automated clinical coding: what, why, and where we are?". NPJ Digital Medicine 5.1 (2022): 159. Paper
• Erik B. Myklebust, Ernesto Jiménez-Ruiz, Jiaoyan Chen, Raoul Wolf, Knut Erik Tollefsen. "Prediction of adverse biological effects of chemicals using knowledge graph embeddings." Semantic Web, vol. 13, no. 3, pp. 299-338, 2022. Paper
• Jiaoyan Chen, Pan Hu, Ernesto Jimenez-Ruiz, Ole Magnus Holter, Denvar Antonyrajah and Ian Horrocks. "OWL2Vec*: Embedding of OWL Ontologies". Machine Learning 110.7 (2021): 1813-1845. Github, Paper
• Yuxia Geng, Jiaoyan Chen, Zhiquan Ye, Wei Zhang and Huajun Chen. "Explainable Zero-shot Learning via Attentive Graph Convolutional Network and Knowledge Graphs" Semantic Web 12.5 (2021): 741-765. Paper
• Jiaoyan Chen, Freddy Lecue, Jeff Z. Pan, Shumin Deng, Huajun Chen. "Knowledge Graph Embeddings for Dealing with Concept Drift in Machine Learning". Journal of Web Semantics 67 (2021): 100625. Paper
• Jiaoyan Chen, Yan Zhou, Alexander Zipf and Hongchao Fan. "Deep Learning from Multiple Crowds: A Case Study of Humanitarian Mapping." IEEE Transactions on Geoscience and Remote Sensing 57 (3), 1713-1722, 2018. (Project DeepVGI in University of Heidelberg, see more)
• Jiaoyan Chen, Huajun Chen, Zhaohui Wu, Daning Hu, and Jeff Z. Pan. "Forecasting smog-related health hazard based on social media and physical sensor." Information Systems 64 (2017): 281-291.
• Jiaoyan Chen, Huajun Chen, Xiangyi Wan, Guozhou Zheng. "MR-ELM: a MapReduce-based framework for large-scale ELM training in big data era." Neural Computing and Applications 27 (2016): 101-110.
• Jiaoyan Chen, Guozhou Zheng, Cong Fang, Ningyu Zhang, Huajun Chen, Zhaohui Wu. "Time-series processing of large scale remote sensing data with extreme learning machine." Neurocomputing 128 (2014): 199-206.

Selective Conference/Workshop Publications

• Nan Hu, Jiaoyan Chen, Yike Wu, Guilin Qi, Sheng Bi, Tongtong Wu, Jeff Z Pan "Benchmarking Large Language Models in Complex Question Answering Attribution using Knowledge Graphs". Under work. Pre-print
• Yuan He, Zhangdie Yuan, Jiaoyan Chen, Ian Horrocks. "Language Models as Hierarchy Encoders". Under work. Pre-print
• Yuxia Geng, Jiaoyan Chen, Yuhang Zeng, Zhuo Chen, Wen Zhang, Jeff Z Pan, Yuxiang Wang, Xiaoliang Xu. "Prompting Disentangled Embeddings for Knowledge Graph Completion with Pre-trained Language Model". Under work. Pre-print
• Dehai Min, Nan Hu, Rihui Jin, Nuo Lin, Jiaoyan Chen, Yongrui Chen, Yu Li, Guilin Qi, Yun Li, Nijun Li, Qianren Wang. "Exploring the Impact of Table-to-Text Methods on Augmenting LLM-based Question Answering with Domain Hybrid Data". NAACL 2024 (Industry Track). Pre-print
• •Hang Dong, Jiaoyan Chen, Yuan He, Yongsheng Gao, Ian Horrocks. "A Language Model based Framework for New Concept Placement in Ontologies". ESWC 2024.
• Tianzhe Zhao, Jiaoyan Chen, Yanchi Ru, Qika Lin, Yuxia Geng and Jun Liu. "Untargeted Adversarial Attack on Knowledge Graph Embeddings". SIGIR 2024.
• Mathias Jackermeier, Jiaoyan Chen, Ian Horrocks. "Dual Box Embeddings for the Description Logic EL++". The Web Conference 2024. Pre-print, Github
• Jingchuan Shi, Hang Dong, Jiaoyan Chen, Zhe Wu, Ian Horrocks. "Taxonomy Completion via Implicit Concept Insertion". The Web Conference 2024. Papper
• Hang Dong, Jiaoyan Chen, Yuan He, Yongsheng Gao, Ian Horrocks. "A Language Model based Framework for New Concept Placement in Ontologies". ESWC 2024. Paper
• Lingbing Guo, Zhuo Chen, Jiaoyan Chen, Wen Zhang, Huajun Chen. "Revisit and Outstrip Entity Alignment: A Perspective of Generative Models". ICLR 2024. Paper
• Yong Guan, Freddy Lecue, Jiaoyan Chen Ru Li, Jeff Z. Pan. "Knowledge-aware Neuron Interpretation for Scene Classification". AAAI 2024.
• Wen Zhang, Jiaoyan Chen, Juan Li, Zezhong Xu, Jeff Z Pan, Huajun Chen. "Knowledge Graph Reasoning with Logics and Embeddings: Survey and Perspective". 2023. Pre-print
• Hang Dong, Jiaoyan Chen, Yuan He, Ian Horrocks. "Ontology Enrichment from Texts: A Biomedical Dataset for Concept Discovery and Placement". CIKM 2023 (Best Resource Paper Runner-up). Paper, Dataset
• Hang Dong, Jiaoyan Chen, Yuan He, Yinan Liu, Ian Horrocks. "Reveal the Unknown: Out-of-Knowledge-Base Mention Discovery with Entity Linking Authors". CIKM 2023. Paper, Github
• Yuan He, Jioayan Chen, Hang Dong, Ian Horrocks. "Exploring Large Language Models for Ontology Alignment". ISWC 2023 (Poster). Paper, Github
• Zhuo Chen, Lingbing Guo, Yin Fang, Yichi Zhang, Jiaoyan Chen, Jeff Z Pan, Yangning Li, Huajun Chen, Wen Zhang. "Rethinking Uncertainly Missing and Ambiguous Visual Modality in Multi-Modal Entity Alignment". ISWC 2023 (Best Paper Nominee). Paper, Github
• Zhuo Chen, Jiaoyan Chen, Lingbing Guo, Yin Fang, Yufeng Huang, Yuxia Geng, Jeff Z Pan, Wenting Song, Huajun Chen. "MEAformer: Multi-modal Entity Alignment Transformer for Meta Modality Hybrid". ACM Multimedia 2023. Paper, Github
• Yong Guan, Jiaoyan Chen, Freddy Lecue, Jeff Pan, Juanzi Li, Ru Li. "Trigger-Argument based Explanation for Event Detection". Findings of ACL 2023. Paper
• Yuan He, Jiaoyan Chen, Ernesto Jiménez-Ruiz, Hang Dong, Ian Horrocks. "Language Model Analysis for Ontology Subsumption Inference". Findings of ACL 2023. Paper, Github
• Jingchuan Shi, Jiaoyan Chen, Hang Dong, Ishita Khan, Lizzie Liang, Qunzhi Zhou, Zhe Wu, Ian Horrocks. "Subsumption prediction on e-commerce taxonomies". ESWC 2023. Paper
• Yangning Li, Jiaoyan Chen, Yinghui Li, Yuejia Xiang, Xi Chen, Hai-Tao Zheng. "Vision, Deduction and Alignment: An Empirical Study on Multi-modal Knowledge Graph Alignment". ICASSP 2023. Paper
• Zhuo Chen, Yufeng Huang, Jiaoyan Chen, Yuxia Geng, Wen Zhang, Yin Fang, Jeff Z Pan, Wenting Song, Huajun Chen. "DUET: Cross-modal Semantic Grounding for Contrastive Zero-shot Learning". AAAI 2023. Paper
• Yuxia Geng, Jiaoyan Chen, Wen Zhang, Jeff Z. Pan, Mingyang Chen, Huajun Chen, Song Jiang. "Relational Message Passing for Fully Inductive Knowledge Graph Completion". ICDE 2023. Paper, Github
• Yuxia Geng, Jiaoyan Chen, Wen Zhang, Yajing Xu, Zhuo Chen, Jeff Z. Pan, Yufeng Huang, Feiyu Xiong, Huajun Chen. "Disentangled Ontology Embedding for Zero-shot Learning". KDD 2022. Paper, Github
• Yuan He, Jiaoyan Chen, Hang Dong, Ernesto Jimenez-Ruiz, Ali Hadian and Ian Horrocks. "Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching". ISWC 2022 (Best Resource Paper Nominee). Paper, Github
• Zhuo Chen, Yufeng Huang, Jiaoyan Chen, Yuxia Geng, Yin Fang, Jeff Z. Pan, Ningyu Zhang, Wen Zhang. "LaKo: Knowledge-driven Visual Question Answering via Late Knowledge-to-Text Injection". IJCKG 2022 (Best Application Paper).
• Yuan He, Jiaoyan Chen, Denvar Antonyrajah and Ian Horrocks. "BERTMap: A BERT-based Ontology Alignment System". AAAI 2022. Paper,Github
• Zhiyuan Qi, Ziheng Zhang, Jiaoyan Chen, Xi Chen, Yefeng Zheng. "PRASEMap: A Probabilistic Reasoning and Semantic Embedding based Knowledge Graph Alignment System". CIKM 2021 (Demo).Paper,Codes, PRASEMap Demo
• Zhuo Chen, Jiaoyan Chen, Yuxia Geng, Jeff Z. Pan, Zonggan Yuan and Huajun Chen. "Zero-shot Visual Question Answering using Knowledge Graphs", ISWC, 2021.
• Jiaoyan Chen, Yuxia Geng, Zhuo Chen, Ian Horrocks, Jeff Z. Pan and Huajun Chen. "Knowledge-aware Zero-shot Learning: Survey and Perspective". IJCAI Survey Track, 2021. Paper
• Zhiyuan Qi, Ziheng Zhang, Jiaoyan Chen, Xi Chen, Yuejia Xiang, Ningyu Zhang, Yefeng Zheng. "Unsupervised Knowledge Graph Alignment by Probabilistic Reasoning and Semantic Embedding". IJCAI, 2021.Paper, Codes, PRASEMap Demo
• Yuejia Xiang, Ziheng Zhang, Jiaoyan Chen, Xi Chen, Zhenxi Lin and Yefeng Zheng. "OntoEA: Ontology-guided Entity Alignment via Joint Knowledge Graph Embedding". Findings of ACL, 2021.Paper
• Jiaoyan Chen, Ernesto Jimenez-Ruiz, Ian Horrocks, Denvar Antonyrajah, Ali Hadian and Jaehun Lee. "Augmenting Ontology Alignment by Semantic Embedding and Distant Supervision". ESWC, 2021 (Best Paper Nominee). Github/Paper
• Yuxia Geng, Jiaoyan Chen, Zhuo Chen, Jeff Z. Pan, etc. "OntoZSL: Ontology-enhanced Zero-shot Learning". The Web Conference (WWW), 2021. With case studies on both image classification and KG completion.Paper,Data and Codes
• Ian Horrocks, Jiaoyan Chen and Jaehun Lee. "Tool Support for Ontology Design and Quality Assurance". ICBO 2020 Integrated Food Ontology Workshop (IFOW). Paper
• Ziheng Zhang, Jiaoyan Chen, Xi Chen, Hualuo Liu, Yuejia Xiang, Bo Liu and Yefeng Zhang. "An Industry Evaluation of Embedding-based Entity Alignment". The 28th International Conference on Computational Linguistics (COLING'2020), Industry Track. Data,Paper, Video
• Jiaoyan Chen, Freddy Lecue, Yuxia Geng, Jeff Z. Pan and Huajun Chen. "Ontology-guided Semantic Composition for Zero-Shot Learning", KR 2020 -- Special Session KR and Machine Learning Paper,Video
• Ernesto Jiménez-Ruiz, Oktie Hassanzadeh, Vasilis Efthymiou, Jiaoyan Chen and Kavitha Srinivas. "SemTab 2019: Resources to Benchmark Tabular Data to Knowledge Graph Matching Systems." ESWC 2020. Paper
• Jiaoyan Chen, Xi Chen, Ian Horrocks, Ernesto Jiménez-Ruiz and Erik B. Myklebus. "Correcting Knowledge Base Assertions." The Web Conference (WWW) 2020. Paper, Github
• Ernesto Jimenez-Ruiz, Asan Agibetov, Jiaoyan Chen, Matthias Samwald and Valerie Cross. "Dividing the Ontology Alignment Task with Semantic Embeddings and Logic-based Modules." The 24th European Conference on Artificial Intelligence (ECAI) 2020.
• Zhiquan Ye, Yuxia Geng, Jiaoyan Chen, Jingmin Chen, Xiaoxiao Xu, Suhang Zheng, Feng Wang, Jun Zhang, Huajun Chen. "Zero-shot Text Classification via Reinforced Self-training". ACL 2020. Paper
• Jiaoyan Chen, Ernesto Jiménez-Ruiz and Ian Horrocks. "Canonicalizing Knowledge Base Literals." International Semantic Web Conference (ISWC) 2019. Paper, Github
• Erik B. Myklebust, Ernesto Jiménez-Ruiz, Jiaoyan Chen, Raoul Wolf, Knut Erik Tollefsen. "Knowledge Graph Embedding for Ecotoxicological Effect Prediction." International Semantic Web Conference (ISWC) 2019. In-Use Track Best Student Paper
• Jiaoyan Chen, Ernesto Jiménez-Ruiz, Ian Horrocks, and Charles Sutton. "Learning Semantic Annotations for Tabular Data." IJCAI 2019. Github, Paper
• Jiaoyan Chen, Ernesto Jiménez-Ruiz, Ian Horrocks, and Charles Sutton. "ColNet: Embedding the Semantics of Web Tables for Column Type Prediction." AAAI 2019. Paper, Github
• Wen Zhang, Bibek Paudel, Liang Wang, Jiaoyan Chen, Hai Zhu, Wei Zhang, Abraham Bernstein, Huajun Chen. "Iteratively Learning Embeddings and Rules for Knowledge Graph Reasoning." The Web Conference (WWW) 2019. Paper
• Jiaoyan Chen, Freddy Lécué, Jeff Z. Pan, Ian Horrocks, and Huajun Chen. "Knowledge-based Transfer Learning Explanation." KR 2018. Paper
• Jiaoyan Chen, Freddy Lécué, Jeff Z. Pan, and Huajun Chen. "Learning from ontology streams with semantic concept drift." IJCAI 2017. Paper
• Jiaoyan Chen, Huajun Chen, Daning Hu, Jeff Z. Pan, Yalin Zhou. "Smog Disaster Forecasting using Social Web Data and Physical Sensor Data." IEEE Big Data 2015. Paper
• Jiaoyan Chen, Huajun Chen, Guozhou Zheng, Jeff Z. Pan, Honghan Wu and Ningyu Zhang. "Big smog meets web science: smog disaster analysis based on social media and device data on the web." WWW 2014. Paper

      Please visit my Google Scholar for a complete publication list.